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About replacement of GitHub Enterprise Server cluster nodes

You can replace a functional node in a GitHub Enterprise Server cluster, or you can replace a node that has failed unexpectedly.

Replacing a functional node

You can replace an existing, functional node in your cluster. For example, you may want to provide a virtual machine (VM) with additional CPU, memory, or storage resources.

To replace a functional node, install the GitHub Enterprise Server appliance on a new VM, configure an IP address, add the new node to the cluster configuration file, initialize the cluster and apply the configuration, then take the node you replaced offline.

1. Provision and install GitHub Enterprise Server with a unique hostname on the replacement node.

2. Using the administrative shell or DHCP, only configure the IP address of the replacement node. Don't configure any other settings.

3. To add the newly provisioned replacement node, on any node, modify the cluster.conf file to remove the failed node and add the replacement node. For example, this modified cluster.conf file replaces ghe-data-node-3 with the newly provisioned node, ghe-replacement-data-node-3:

   [cluster "ghe-replacement-data-node-3"]
     hostname = ghe-replacement-data-node-3
     ipv4 = 192.168.0.7
     # ipv6 = fd12:3456:789a:1::7
     git-server = true
     pages-server = true
     mysql-server = true
     elasticsearch-server = true
     redis-server = true
     memcache-server = true
     metrics-server = true
     storage-server = true
   

4. From the administrative shell of the node with the modified cluster.conf, run ghe-cluster-config-init. This will initialize the newly added node in the cluster.

5. From the same node, run ghe-cluster-config-apply. This will validate the configuration file, copy it to each node in the cluster, and configure each node according to the modified cluster.conf file.

6. If you're taking a node offline that provides data services, such as git-server, pages-server, or storage-server, evacuate the node. For more information, see "Evacuating a cluster node running data services."

7. To mark the failed node offline, on any node, modify the cluster configuration file (cluster.conf) in the relevant node section to include the text offline = true.

   For example, this modified cluster.conf will mark the ghe-data-node-3 node as offline:

   [cluster "ghe-data-node-3"]
   hostname = ghe-data-node-3
   offline = true
   ipv4 = 192.168.0.6
   # ipv6 = fd12:3456:789a:1::6
   

8. From the administrative shell of the node where you modified cluster.conf, run ghe-cluster-config-apply. This will validate the configuration file, copy it to each node in the cluster, and mark the node offline.

9. If you're replacing the primary MySQL or Redis node, in cluster.conf, modify the mysql-master or redis-master value with the replacement node name.

   For example, this modified cluster.conf file specifies a newly provisioned cluster node, ghe-replacement-data-node-1 as the primary MySQL and Redis node:

   mysql-master = ghe-replacement-data-node-1
   redis-master = ghe-replacement-data-node-1
   

Replacing a node in an emergency

You can replace a failed node in your cluster. For example, a software or hardware issue may affect a node's availability.

To replace a node in an emergency, install the GitHub Enterprise Server appliance on a new VM, configure an IP address, take the failed node offline, apply the configuration, add the new node to the cluster configuration file, initialize the cluster and apply the configuration, and optionally, evacuate the failed node.

1. Provision and install GitHub Enterprise Server with a unique hostname on the replacement node.

2. Using the administrative shell or DHCP, only configure the IP address of the replacement node. Don't configure any other settings.

3. To mark the failed node offline, on any node, modify the cluster configuration file (cluster.conf) in the relevant node section to include the text offline = true.

   For example, this modified cluster.conf will mark the ghe-data-node-3 node as offline:

   [cluster "ghe-data-node-3"]
   hostname = ghe-data-node-3
   offline = true
   ipv4 = 192.168.0.6
   # ipv6 = fd12:3456:789a:1::6
   

4. From the administrative shell of the node where you modified cluster.conf, run ghe-cluster-config-apply. This will validate the configuration file, copy it to each node in the cluster, and mark the node offline.

5. To add the newly provisioned replacement node, on any node, modify the cluster.conf file to remove the failed node and add the replacement node. For example, this modified cluster.conf file replaces ghe-data-node-3 with the newly provisioned node, ghe-replacement-data-node-3:

   [cluster "ghe-replacement-data-node-3"]
     hostname = ghe-replacement-data-node-3
     ipv4 = 192.168.0.7
     # ipv6 = fd12:3456:789a:1::7
     git-server = true
     pages-server = true
     mysql-server = true
     elasticsearch-server = true
     redis-server = true
     memcache-server = true
     metrics-server = true
     storage-server = true
   

6. If you're replacing the primary MySQL or Redis node, in cluster.conf, modify the mysql-master or redis-master value with the replacement node name.

   For example, this modified cluster.conf file specifies a newly provisioned cluster node, ghe-replacement-data-node-1 as the primary MySQL and Redis node:

   mysql-master = ghe-replacement-data-node-1
   redis-master = ghe-replacement-data-node-1
   

7. From the administrative shell of the node with the modified cluster.conf, run ghe-cluster-config-init. This will initialize the newly added node in the cluster.

8. From the same node, run ghe-cluster-config-apply. This will validate the configuration file, copy it to each node in the cluster, and configure each node according to the modified cluster.conf file.

9. If you're taking a node offline that provides data services, such as git-server, pages-server, or storage-server, evacuate the node. For more information, see "Evacuating a cluster node running data services."

Replacing the primary MySQL node

To provide database services, your cluster requires a primary MySQL node and at least one secondary MySQL node. For more information, see "About cluster nodes."

If you want to provide the VM for your primary MySQL node with more resources, or if the node fails, you can replace the node. To minimize downtime, add the new node to your cluster, replicate the MySQL data, and then promote the node. Some downtime is required during promotion.

1. Provision and install GitHub Enterprise Server with a unique hostname on the replacement node.

2. Using the administrative shell or DHCP, only configure the IP address of the replacement node. Don't configure any other settings.

3. To connect to your GitHub Enterprise Server instance, SSH into any of your cluster's nodes. From your workstation, run the following command. Replace HOSTNAME with the node's hostname. For more information, see "Accessing the administrative shell (SSH)."

   Shell

   ssh -p 122 admin@HOSTNAME
   

4. Open the cluster configuration file at /data/user/common/cluster.conf in a text editor. For example, you can use Vim. Create a backup of the cluster.conf file before you edit the file.

   Shell

   sudo vim /data/user/common/cluster.conf
   

5. The cluster configuration file lists each node under a [cluster "HOSTNAME"] heading. Add a new heading for the node and enter the key-value pairs for configuration, replacing the placeholders with actual values.

   • Ensure that you include the mysql-server = true key-value pair.
   • The following section is an example, and your node's configuration may differ.

   ...
   [cluster "HOSTNAME"]
     hostname = HOSTNAME
     ipv4 = IPV4-ADDRESS
     # ipv6 = IPV6-ADDRESS
     consul-datacenter = PRIMARY-DATACENTER
     datacenter = DATACENTER
     mysql-server = true
     redis-server = true
     ...
   ...
   

6. From the administrative shell of the node with the modified cluster.conf, run ghe-cluster-config-init. This will initialize the newly added node in the cluster.

7. From the administrative shell of the node where you modified cluster.conf, run ghe-cluster-config-apply. This will validate the configuration file, copy it to each node in the cluster, and mark the node offline.

8. Wait for MySQL replication to finish. To monitor MySQL replication from any node in the cluster, run ghe-cluster-status -v.

   Shortly after adding the node to the cluster, you may see an error for replication status while replication catches up. Replication can take hours depending on the instance's load and the last time the instance generated a database seed.

9. During your scheduled maintenance window, enable maintenance mode. For more information, see "Enabling and scheduling maintenance mode."

10. Ensure that MySQL replication is finished from any node in the cluster by running ghe-cluster-status -v.

    Warning: If you do not wait for MySQL replication to finish, you risk data loss on your instance.

11. To set the current MySQL primary node to read-only mode, run the following command from of the instance's nodes.

    Shell

    echo "SET GLOBAL super_read_only = 1;" | sudo mysql
    

12. Wait until Global Transaction Identifiers (GTIDs) set on the primary and secondary MySQL nodes are identical. To check the GTIDs, run the following command from any of the instance's nodes.

    Shell

    ghe-cluster-each -r mysql -- 'echo "SELECT @@global.gtid_executed;" | sudo mysql'
    

13. After the GTIDs on the primary and secondary MySQL nodes match, update the cluster configuration by opening the cluster configuration file at /data/user/common/cluster.conf in a text editor.

    • Create a backup of the cluster.conf file before you edit the file.
    • In the top-level [cluster] section, remove the hostname for the node you replaced from the mysql-master key-value pair, then assign the new node instead. If the new node is also a primary Redis node, adjust the redis-master key-value pair.

    [cluster]
      mysql-master = NEW-NODE-HOSTNAME
      redis-master = NEW-NODE-HOSTNAME
      primary-datacenter = primary
    ...
    

14. From the administrative shell of the node where you modified cluster.conf, run ghe-cluster-config-apply. This will validate the configuration file, copy it to each node in the cluster, and mark the node offline.

15. Check the status of MySQL replication from any node in the cluster by running ghe-cluster-status -v.

16. If MySQL replication is finished, from any node in the cluster, disable maintenance mode. For more information, see "Enabling and scheduling maintenance mode."