Only owners or team admins can remove organization members. When a user is removed from a team or organization, their issues, pull requests, and comments in the organization's repositories remain intact and are still attributed to the user.
Warning: When you remove a user from an organization, they will lose access to any private forks they have of your organization's private repositories. They may still have local copies of those forks. However, they will be unable to sync them with your organization's repositories. You are responsible for ensuring that people who have lost access to a repository delete any confidential information or intellectual property. If the user removed from your organization was an organization member, their access to private forks of organization repositories can be restored if the user is reinstated as an organization member within three months of being removed from an organization.
Removing a team member
Note: A team that's synced to an LDAP group is indicated with a special LDAP badge. The member list for an LDAP synced team can only be managed from the LDAP group it's mapped to.
To remove an existing member of a team synced to an LDAP group, contact your LDAP administrator.
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In the top right corner of GitHub Enterprise Server, click your profile photo, then click Your organizations.
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Click the name of your organization.
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Under your organization name, click Teams.
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On the Teams tab, click the name of the team.
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Select the person or people you'd like to remove.
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Above the list of team members, use the drop-down menu and click Remove from team.
Removing a user from an organization
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In the top right corner of GitHub Enterprise Server, click your profile photo, then click Your organizations.
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Click the name of your organization.
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Under your organization name, click People.
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Next to the name of the users you want to remove from the organization, click the check box.
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At the top of the page, under the organization name, click Remove from organization.
Note: When you remove a user from your organization, their membership data is saved for three months. You can restore their data, or any private forks they owned of your organization's repositories, if you invite the user to rejoin the organization within that time frame. For more information, see "Reinstating a former member of your organization."